Solitary male chacma baboons in a desert canyon

Solitary and paired adult (nine) and subadult (one) male chacma baboons, Papio ursinus, were observed over a period of years living in part of a wooded desert canyon not used by adjacent troops. These extratroop males were silent when alone and gave only one alarm vocalization, the “wa-hoo” call, when paired. The space occupied by them is unsuitable for use by troops according to criteria for adequate sleeping sites and access to water. But the foods available to them, especially figs, but also other fruits and fresh acacia seeds, were abundant. These foods are more highly preferred by baboons than those foods available to troop members. Troop members deplete these resources and shift to less preferred foods with lower water content and longer processing times. All of the adult members of the troop adjacent to these isolated males were infected with a skin disease. Isolated males were not so afflicted and so cannot have originated from, or ever been a part of, this troop. They probably moved to the space where they were observed from other inland troops, traveling to their current home range along the narrow canyon river course.     

An individual-based model for competingDrosophila populations

An individual-based model forDrosophila is formulated, based on competition amongst larvae consuming the same batch of food. The predictions of the model are supported by data for single speciesDrosophila populations reared in the laboratory. The model is used to build a simple discrete model for the dynamics ofDrosophila populations that are kept over a number of generations. The dynamics of a single species is shown to give either a stable equilibrium or fluctuations which can be periodic or chaotic. When the dynamics of a species in the absence of the other is periodic or chaotic, we found coexistence or two alternative states, on neither of which the species can coexist.     

A general model of the public goods dilemma

An individually costly act that benefits all group members is a public good. Natural selection favours individual contribution to public goods only when some benefit to the individual offsets the cost of contribution. Problems of sex ratio, parasite virulence, microbial metabolism, punishment of noncooperators, and nearly all aspects of sociality have been analysed as public goods shaped by kin and group selection. Here, I develop two general aspects of the public goods problem that have received relatively little attention. First, variation in individual resources favours selfish individuals to vary their allocation to public goods. Those individuals better endowed contribute their excess resources to public benefit, whereas those individuals with fewer resources contribute less to the public good. Thus, purely selfish behaviour causes individuals to stratify into upper classes that contribute greatly to public benefit and social cohesion and to lower classes that contribute little to the public good. Second, if group success absolutely requires production of the public good, then the pressure favouring production is relatively high. By contrast, if group success depends weakly on the public good, then the pressure favouring production is relatively weak. Stated in this way, it is obvious that the role of baseline success is important. However, discussions of public goods problems sometimes fail to emphasize this point sufficiently. The models here suggest simple tests for the roles of resource variation and baseline success. Given the widespread importance of public goods, better models and tests would greatly deepen our understanding of many processes in biology and sociality.     

Spatial and trophic partitioning in cryptic fish communities of shallow subtidal reefs in False Bay, South Africa

Thirty-nine species of cryptic fishes belonging to 16 families were captured on shallow reefs (0-20 m) in False Bay, South Africa using the ichthyocide rotenone. Five samples were collected in each of four depth zones (0-5, 6-10, 11-15 and 16-20 m). The area from which fish were collected in each sample was measured to give an estimate of density. The overall density of cryptic fishes in the area was 3.41 fish m^-2, with the families Congrogadidae and Clinidae being numerically dominant, representing 27.9% and 22.3% of the total sample respectively. The Clinidae were by far the most diverse group, being represented by 17 species, while no other family was represented by more than three species. Multivariate analysis of numerical density revealed that partitioning of spatial resources did occur, with the shallowest samples (0-5 m) forming a group discrete from the deeper samples (6-20 m). Further analysis indicated that the amount of algal cover present was the most important factor influencing community structure, although the abundance of algae is in turn related to depth. The shallowest samples were dominated by members of the families Clinidae, Gobiesocidae and Bythitidae, while the Cheilodactylidae, Tripterygiidae and Ariidae were more important components of deeper water communities (6–20 m). Analysis of percentage volume of prey items in the diets of 21 species revealed that only two species shared diets that were more than 50% similar, and that partitioning of trophic resources was considerable. This revised version was published online in July 2006 with corrections to the Cover Date.     

Biostimulation to identify microbial communities involved in methane generation in shallow,kerogen‐rich shales

Aims

The aim of the present study was to design and test a method allowing the detection and quantification of methanogenic consortia in organic‐rich rocks to determine the potential of methane biotransformation.

Methods and Results

Methanogen numbers in the rock are often below the detection levels of quantification methods. Biostimulation was tested as a means to specifically increase bacterial and archaeal numbers above the detection levels in microcosms. Biostimulation reveals the presence of active heterotrophic and syntrophic bacterial consortia, methane accumulation and methanogens in one of four rock samples. Syntrophs and heterotrophs were dominated by Firmicutes, whereas archaeal diversity was limited to methanogens. Methane‐producing microcosms were characterized by a higher Firmicutes diversity.

Conclusions

Biostimulation is a reliable tool for detection of methanogenic consortia in organic‐rich rocks. For routine and large scale experimentation, methane accumulation monitoring after biostimulation appears as the most time, work and cost efficient approach to detect the presence of active methanogenic consortia.

Significance and Impact of the Study

We report for the first time the presence of live methanogenic consortia in organic‐rich shales and their ability to mineralize the rock into methane. This approach will be instrumental to quantify the potential of these rocks to produce methane as a novel energy source.     

Effects of diet and host access on fecundity and lifespan in two fruit fly species with different life‐history patterns

The reproductive ability of female tephritids can be limited and prevented by denying access to host plants and restricting the dietary precursors of vitellogenesis. The mechanisms underlying the delayed egg production in each case are initiated by different physiological processes that are anticipated to have dissimilar effects on lifespan and reproductive ability later in life. The egg‐laying abilities of laboratory‐reared females of the Mediterranean fruit fly (Ceratitis capitata Wiedmann) and melon fly (Bactrocera cucurbitae Coquillett) from Hawaii are delayed or suppressed by limiting access to host fruits and dietary protein. In each case, this is expected to prevent the loss of lifespan associated with reproduction until protein or hosts are introduced. Two trends are observed in each species: first, access to protein at eclosion leads to a greater probability of survival and a higher reproductive ability than if it is delayed and, second, delayed host access reduces lifetime reproductive ability without improving life expectancy. When host access and protein availability are delayed, the rate of reproductive senescence is reduced in the medfly, whereas the rate of reproductive senescence is generally increased in the melon fly. Overall, delaying reproduction lowers the fitness of females by constraining their fecundity for the remainder of the lifespan without extending the lifespan. © 2013 The Royal Entomological Society     

Complex Genetic Effects on Early Vegetative Development Shape Resource Allocation Differences Between Arabidopsis lyrata Populations

Costs of reproduction due to resource allocation trade-offs have long been recognized as key forces in life history evolution, but little is known about their functional or genetic basis. Arabidopsis lyrata, a perennial relative of the annual model plant A. thaliana with a wide climatic distribution, has populations that are strongly diverged in resource allocation. In this study, we evaluated the genetic and functional basis for variation in resource allocation in a reciprocal transplant experiment, using four A. lyrata populations and F₂ progeny from a cross between North Carolina (NC) and Norway parents, which had the most divergent resource allocation patterns. Local alleles at quantitative trait loci (QTL) at a North Carolina field site increased reproductive output while reducing vegetative growth. These QTL had little overlap with flowering date QTL. Structural equation models incorporating QTL genotypes and traits indicated that resource allocation differences result primarily from QTL effects on early vegetative growth patterns, with cascading effects on later vegetative and reproductive development. At a Norway field site, North Carolina alleles at some of the same QTL regions reduced survival and reproductive output components, but these effects were not associated with resource allocation trade-offs in the Norway environment. Our results indicate that resource allocation in perennial plants may involve important adaptive mechanisms largely independent of flowering time. Moreover, the contributions of resource allocation QTL to local adaptation appear to result from their effects on developmental timing and its interaction with environmental constraints, and not from simple models of reproductive costs.     

Long-Term m5C Methylome Dynamics Parallel Phenotypic Adaptation in the Cyanobacterium Trichodesmium

A major challenge in modern biology is understanding how the effects of short-term biological responses influence long-term evolutionary adaptation, defined as a genetically determined increase in fitness to novel environments. This is particularly important in globally important microbes experiencing rapid global change, due to their influence on food webs, biogeochemical cycles, and climate. Epigenetic modifications like methylation have been demonstrated to influence short-term plastic responses, which ultimately impact long-term adaptive responses to environmental change. However, there remains a paucity of empirical research examining long-term methylation dynamics during environmental adaptation in nonmodel, ecologically important microbes. Here, we show the first empirical evidence in a marine prokaryote for long-term m5C methylome modifications correlated with phenotypic adaptation to CO₂, using a 7-year evolution experiment (1,000+ generations) with the biogeochemically important marine cyanobacterium Trichodesmium. We identify m5C methylated sites that rapidly changed in response to high (750 µatm) CO₂ exposure and were maintained for at least 4.5 years of CO₂ selection. After 7 years of CO₂ selection, however, m5C methylation levels that initially responded to high-CO₂ returned to ancestral, ambient CO₂ levels. Concurrently, high-CO₂ adapted growth and N₂ fixation rates remained significantly higher than those of ambient CO₂ adapted cell lines irrespective of CO₂ concentration, a trend consistent with genetic assimilation theory. These data demonstrate the maintenance of CO₂-responsive m5C methylation for 4.5 years alongside phenotypic adaptation before returning to ancestral methylation levels. These observations in a globally distributed marine prokaryote provide critical evolutionary insights into biogeochemically important traits under global change.